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Publication list

  • P. Guerrero, and R.Perez-Carrasco
    Choice of friction coefficient deeply affects tissue behaviour in stochastic epithelial vertex models
    Philosophical Transactions of the Royal Society B (2024)
  • S. Perez Montero, P.K. Paul, A. di Gregorio, S. Bowling, S. Shepherd, N. J. Fernandes, A. Lima, R. Perez-Carrasco, Tristan A. Rodriguez
    Mutation of p53 increases the competitive ability of pluripotent stem cells
    Development (2024)
  • C. Manser, and R. Perez-Carrasco
    A Mathematical Framework for Measuring and Tuning Tempo in Developmental Gene Regulatory Networks
    Development (2024)
  • F. Baier, F. Gauye, R. Perez-Carrasco, , J.L. Payne, Y. Schaerli Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks
    Science Advances (2023)
  • I. Otero-Muras, R. Perez-Carrasco, J. R. Banga, C. P. Barnes
    Automated design of gene circuits with optimal mushroom-bifurcation behaviour
    iScience (2023)
  • H. C. Lee, C. Hastings, N.M.M. Oliveira, R. Perez-Carrasco, K.M. Page, L. Wolpert, C.D. Stern
    “Neighbourhood watch” model: embryonic epiblast cells assess positional information in relation to their neighbours
    Development (2022)
  • R. Perez-Carrasco, M. Franco-Oñate, J. Walter, J. Dorignac, F. Geniet, J. Palmeri, A. Parmeggiani, N. Walliser, A. L. Nord
    Relaxation time asymmetry in stator dynamics of the bacterial flagellar motor
    Science advances (2022)
  • K. Exelby, E. Herrera-Delgado, L. Garcia-Perez, R. Perez-Carrasco, A. Sagner, V. Metzis,
    P. Sollich, J. Briscoe.
    Precision of tissue patterning is controlled by dynamical properties of gene regulatory networks
    Development (2021)
  • Ruben Perez-CarrascoCasper BeentjesRamon Grima
    Effects of cell cycle variability on lineage and population measurements of mRNA abundance
    J. Royal. Soc. Interface (2020)
  • Teresa Rayon, Despina Stamataki, Ruben Perez-Carrasco, Lorena Garcia-Perez, Christopher Barrington, Manuela Melchionda, Katherine Exelby, Victor Tybulewicz, Elizabeth M. C. Fisher, James Briscoe
    Species-specific pace of development is associated with differences in protein stability
    Science (2020)
  • Casper H. L. Beentjes, Ruben Perez-Carrasco, Ramon Grima
    Exact solution of stochastic gene expression models with bursting, cell cycle and replication dynamics
    Physical Review E (2020)
  • Içvara Barbier, Ruben Perez-Carrasco*, Yolanda Schaerli
    Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch
    Molecular Systems Biology (2020)
  • Nuria Folguera-Blasco, Ruben Perez-Carrasco, Elisabet Cuyas, Javier A Menendez, Tomas Alarcon
    A multiscale model of epigenetic heterogeneity reveals the kinetic routes of pathologicalcell fate reprogramming. PLoS Comp. Bio. accepted
    PLoS Comp. Bio. (2019)

  • Pilar Guerrero, Ruben Perez-Carrasco, Marcin Zagorski, David Page, Anna Kicheva, James Briscoe, Karen M. Page
    Neuronal differentiation affects tissue mechanics and progenitor arrangement in the vertebrate neuroepithelium
    Development (2019)
  • Roberto de la Cruz, Ruben Perez-Carrasco*, Pilar Guerrero, Tomas Alarcon, Karen M. Page
    Phys. Rev. Lett. (2019)
  • Karen M. Page, Ruben Perez-Carrasco*
    Degradation rate uniformity determines success of oscillations in repressive feedback regulatory networks
    J. Royal.Soc. Interface (2018)
  • Ruben Perez-Carrasco, Chris P. Barnes, Yolanda Schaerli, Mark Isalan, James Briscoe, Karen M. Page
    The power of the AC-DC circuit: Operating principles of a simple multi-functional transcriptional network motif
    Cell Systems (2018)
  • Roberto de la Cruz, Ruben Perez-Carrasco*, Pilar Guerrero, Tomas Alarcon, Karen M. Page
    Minimum Action Path theory reveals the details of stochastic biochemical transitions out of oscillatory cellular states
    Phys. Rev. Lett. (2018)
  • Edgar Herrera-Delgado, Ruben Perez-Carrasco, James Briscoe, Peter Sollich
    Memory effects in gene regulatory networks reveal key properties of dynamical spatial patterning
    Plos Comp. Biol. (2018)
  • Ashley L NordEmilie GachonRuben Perez-CarrascoJasmine A NirodyAlessandro BarducciRichard M BerryFrancesco Pedaci
    A catch-bond drives stator mechanosensitivity in the Bacterial Flagellar Motor
    PNAS  (2017)
  • R. Perez-Carrasco, P. Guerrero, J. Briscoe, K. Page
    Intrinsic noise profoundly alters the dynamics and steady state of morphogen-controlled bistable genetic switches
    PLoS Comp. Biol. (2016)
  • M. Cohen, K.M. Page, R. Perez-Carrasco, C.P. Barnes, J. Briscoe
    Mathematical models help explain experimental data
    Development (2016)
  • M. Bodnar, P. Guerrero, R. Perez-Carrasco, M. J. Piotrowska
    Deterministic and Stochastic Study for a Microscopic Angiogenesis Model: Applications to the Lewis Lung Carcinoma
    PLoS ONE (2016)
  • M. Woods, M. Leon, R. Perez-Carrasco, C. P. Barnes
    A statistical approach reveals designs for the most robust stochastic gene oscillators
    ACS Synthetic Biology (2016)
  • M. Cohen, K. M. Page, R. Perez-Carrasco, C. P. Barnes, J. Briscoe
    A theoretical framework for the regulation of Shh morphogen-controlled gene expression
    Development (2014)
  • R. Perez-Carrasco, J.M. Sancho
    Theoretical study of a molecular turbine
    Phys. Rev. E (2013)
  • R. Perez-Carrasco, A. Fiasconaro, F. Falo, J. M. Sancho
    Modelling the mechanochemistry of the ϕ29 DNA translocation motor
    Phys. Rev. E (2012)
  • R. Perez-Carrasco, J.M. Sancho
    Molecular motors in conservative and dissipative regimes
    Phys. Rev. E (2011)
  • R. Perez-Carrasco, J.M. Sancho.
    Stochastic algorithms for discontinuous multiplicative white noise
    Phys. Rev. E (2010)